Format

Send to:

Choose Destination

ZSWIM1 zinc finger SWIM-type containing 1 [ Homo sapiens (human) ]

Gene ID: 90204, updated on 8-Apr-2018
Official Symbol
ZSWIM1provided by HGNC
Official Full Name
zinc finger SWIM-type containing 1provided by HGNC
Primary source
HGNC:HGNC:16155
See related
Ensembl:ENSG00000168612 Vega:OTTHUMG00000074023
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf162
Expression
Ubiquitous expression in ovary (RPKM 3.0), testis (RPKM 2.7) and 25 other tissues See more
Orthologs
Location:
20q13.12
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 20 NC_000020.11 (45880920..45885266)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (44509581..44513905)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene sorting nexin family member 21 Neighboring gene acyl-CoA thioesterase 8 Neighboring gene zinc finger SWIM-type containing 3 Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
zinc finger SWIM domain-containing protein 1
Names
zinc finger, SWIM domain containing 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080603.4NP_542170.3  zinc finger SWIM domain-containing protein 1

    See identical proteins and their annotated locations for NP_542170.3

    Status: VALIDATED

    Source sequence(s)
    AL008726
    Consensus CDS
    CCDS13382.2
    UniProtKB/Swiss-Prot
    Q9BR11
    Related
    ENSP00000361601.1, OTTHUMP00000082588, ENST00000372523.1, OTTHUMT00000157064
    Conserved Domains (1) summary
    pfam04434
    Location:379404
    SWIM; SWIM zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p12 Primary Assembly

    Range
    45880920..45885266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260611.4XP_005260668.1  zinc finger SWIM domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005260668.1

    UniProtKB/Swiss-Prot
    Q9BR11
    Conserved Domains (1) summary
    pfam04434
    Location:379404
    SWIM; SWIM zinc finger
  2. XM_005260610.5XP_005260667.1  zinc finger SWIM domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005260667.1

    UniProtKB/Swiss-Prot
    Q9BR11
    Conserved Domains (1) summary
    pfam04434
    Location:379404
    SWIM; SWIM zinc finger
  3. XM_011529100.2XP_011527402.1  zinc finger SWIM domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011527402.1

    UniProtKB/Swiss-Prot
    Q9BR11
    Conserved Domains (1) summary
    pfam04434
    Location:379404
    SWIM; SWIM zinc finger
Support Center