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BMERB1 bMERB domain containing 1 [ Homo sapiens (human) ]

Gene ID: 89927, updated on 12-Oct-2019

Summary

Official Symbol
BMERB1provided by HGNC
Official Full Name
bMERB domain containing 1provided by HGNC
Primary source
HGNC:HGNC:19213
See related
Ensembl:ENSG00000166780
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MINP; C16orf45
Expression
Broad expression in brain (RPKM 40.3), endometrium (RPKM 12.8) and 21 other tissues See more
Orthologs

Genomic context

See BMERB1 in Genome Data Viewer
Location:
16p13.11
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (15434588..15588259)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (15528325..15682116)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371103 Neighboring gene nuclear pore complex interacting protein family member A5 Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene Sharpr-MPRA regulatory region 1380 Neighboring gene uncharacterized LOC105371102 Neighboring gene Sharpr-MPRA regulatory region 9672 Neighboring gene meiosis regulator and mRNA stability factor 1 Neighboring gene microRNA 6506 Neighboring gene microRNA 484 Neighboring gene nudE neurodevelopment protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32618

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
bMERB domain-containing protein 1
Names
migration inhibitory protein
uncharacterized protein C16orf45

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142469.1NP_001135941.1  bMERB domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001135941.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC140504, AI377644, BC023603
    Consensus CDS
    CCDS45422.1
    UniProtKB/Swiss-Prot
    Q96MC5
    Related
    ENSP00000408976.2, ENST00000452191.6
    Conserved Domains (1) summary
    cl23748
    Location:47131
    DUF3585; Protein of unknown function (DUF3585)
  2. NM_033201.3NP_149978.1  bMERB domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_149978.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AI377644, AK057180, BC008967
    Consensus CDS
    CCDS10561.1
    UniProtKB/Swiss-Prot
    Q96MC5
    UniProtKB/TrEMBL
    A0A024QZI8
    Related
    ENSP00000300006.4, ENST00000300006.9
    Conserved Domains (1) summary
    pfam12130
    Location:64148
    DUF3585; Protein of unknown function (DUF3585)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    15434588..15588259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1092565..1246252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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