Format

Send to:

Choose Destination

Slc22a7 solute carrier family 22 member 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 89776, updated on 5-Jun-2021

Summary

Official Symbol
Slc22a7provided by RGD
Official Full Name
solute carrier family 22 member 7provided by RGD
Primary source
RGD:621699
See related
Ensembl:ENSRNOG00000018420
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Oat2
Summary
may act as an organic ion transporter during liver development [RGD, Feb 2006]
Expression
Biased expression in Liver (RPKM 159.8) and Kidney (RPKM 85.8) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Slc22a7 in Genome Data Viewer
Location:
9q12
Exon count:
12
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (14547073..14554354)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (16925321..16931119)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene tau tubulin kinase 1 Neighboring gene cysteine-rich protein 3 Neighboring gene zinc finger protein 318 Neighboring gene small nucleolar RNA SNORA38

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in organic anion transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in organic anion transport TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within response to stilbenoid ISO
Inferred from Sequence Orthology
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in basolateral plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of plasma membrane TAS
Traceable Author Statement
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
solute carrier family 22 member 7
Names
novel liver transporter
organic anion transporter 2
solute carrier family 22 (organic anion transporter), member 7

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053537.2NP_445989.2  solute carrier family 22 member 7

    See identical proteins and their annotated locations for NP_445989.2

    Status: PROVISIONAL

    Source sequence(s)
    AY816233
    UniProtKB/Swiss-Prot
    Q5RLM2
    Related
    ENSRNOP00000025094.3, ENSRNOT00000025094.5
    Conserved Domains (2) summary
    cd06174
    Location:144511
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:11521
    2A0119; cation transport protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    14547073..14554354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084305.1XP_038940233.1  solute carrier family 22 member 7 isoform X2

    Conserved Domains (1) summary
    TIGR00898
    Location:1336
    2A0119; cation transport protein
  2. XM_039084304.1XP_038940232.1  solute carrier family 22 member 7 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:38427
    2A0119; cation transport protein
Support Center