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RTL8C retrotransposon Gag like 8C [ Homo sapiens (human) ]

Gene ID: 8933, updated on 6-Sep-2022

Summary

Official Symbol
RTL8Cprovided by HGNC
Official Full Name
retrotransposon Gag like 8Cprovided by HGNC
Primary source
HGNC:HGNC:2569
See related
Ensembl:ENSG00000134590 MIM:300213; AllianceGenome:HGNC:2569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXX1; Mar8; MAR8C; Mart8; SIRH5; MART8C; FAM127A
Summary
Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See RTL8C in Genome Data Viewer
Location:
Xq26.3
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135032355..135033546)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133357722..133358913)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134166385..134167576)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 10 Neighboring gene retrotransposon Gag like 8B Neighboring gene retrotransposon Gag like 8A Neighboring gene nucleolin pseudogene 2

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117411

General protein information

Preferred Names
retrotransposon Gag-like protein 8C
Names
CAAX box 1
Sushi-Ichi retrotransposon homolog 5
family with sequence similarity 127 member A
mammalian retrotransposon derived protein 8C
mammalian retrotransposon-derived 8C
protein FAM127A
retrotransposon Gag-like protein 8B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078171.2NP_001071639.1  retrotransposon Gag-like protein 8C

    See identical proteins and their annotated locations for NP_001071639.1

    Status: VALIDATED

    Source sequence(s)
    BC002385, CD367165, CX784259
    Consensus CDS
    CCDS43997.1
    UniProtKB/Swiss-Prot
    A6ZKI3
    Related
    ENSP00000257013.7, ENST00000257013.9
    Conserved Domains (1) summary
    pfam16297
    Location:2113
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    135032355..135033546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    133357722..133358913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_003928.1: Suppressed sequence

    Description
    NM_003928.1: This RefSeq was permanently suppressed because it contains the wrong CDS.