These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_046850.1 RefSeqGene
- Range
-
5050..65802
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001289861.1 → NP_001276790.1 period circadian protein homolog 3 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AK308303, AL157954, CN480408, Z98884
- Consensus CDS
-
CCDS76097.1
- UniProtKB/Swiss-Prot
-
P56645
- UniProtKB/TrEMBL
-
A0A087WV69
- Related
- ENSP00000479223.1, ENST00000614998.4
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam08447
Location:285 → 373
- PAS_3; PAS fold
- pfam12114
Location:1064 → 1179
- Period_C; Period protein 2/3C-terminal region
-
NM_001289862.1 → NP_001276791.1 period circadian protein homolog 3 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AB047686, AL157954, CN480408, HY151851, Z98884
- Consensus CDS
-
CCDS72695.1
- UniProtKB/Swiss-Prot
-
P56645
- Related
- ENSP00000482093.1, ENST00000613533.4
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1082 → 1195
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:756 → 1066
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
NM_001289863.2 → NP_001276792.1 period circadian protein homolog 3 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice junction at the 3' end of an exon and lacks an alternate in-frame segment compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AK307760, AL157954, HY151851, Z98884
- UniProtKB/Swiss-Prot
-
P56645
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam08447
Location:285 → 373
- PAS_3; PAS fold
- pfam12114
Location:1057 → 1172
- Period_C; Period protein 2/3C-terminal region
-
NM_001289864.2 → NP_001276793.1 period circadian protein homolog 3 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (5) is shorter at the N-terminus and lacks a single internal aa compared to isoform 1.
- Source sequence(s)
-
AL157954, BC144137, HY151851, Z98884
- UniProtKB/Swiss-Prot
-
P56645
- Conserved Domains (1) summary
-
- pfam12114
Location:763 → 878
- Period_C; Period protein 2/3C-terminal region
-
NM_016831.3 → NP_058515.1 period circadian protein homolog 3 isoform 4
See identical proteins and their annotated locations for NP_058515.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses alternate in-frame splice junctions at three exons compared to variant 1. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AL157954, HY151851, Z98884
- Consensus CDS
-
CCDS89.1
- UniProtKB/Swiss-Prot
-
P56645
- UniProtKB/TrEMBL
-
A2I2N5
- Related
- ENSP00000355031.2, ENST00000361923.2
- Conserved Domains (3) summary
-
- cd00130
Location:284 → 376
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1073 → 1186
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:748 → 1057
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p13 Primary Assembly
- Range
-
7784187..7845181
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017002734.1 → XP_016858223.1 period circadian protein homolog 3 isoform X16
-
XM_017002727.1 → XP_016858216.1 period circadian protein homolog 3 isoform X10
-
XM_024450612.1 → XP_024306380.1 period circadian protein homolog 3 isoform X19
- Conserved Domains (3) summary
-
- cd00130
Location:110 → 202
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:899 → 1012
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:574 → 883
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_017002728.1 → XP_016858217.1 period circadian protein homolog 3 isoform X11
-
XM_017002730.2 → XP_016858219.1 period circadian protein homolog 3 isoform X13
-
XM_017002731.2 → XP_016858220.1 period circadian protein homolog 3 isoform X14
-
XM_005263524.4 → XP_005263581.1 period circadian protein homolog 3 isoform X6
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam08447
Location:285 → 373
- PAS_3; PAS fold
- pfam12114
Location:1083 → 1192
- Period_C; Period protein 2/3C-terminal region
-
XM_024450585.1 → XP_024306353.1 period circadian protein homolog 3 isoform X1
- Related
- ENSP00000366755.3, ENST00000377532.7
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1082 → 1195
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:756 → 1066
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_017002733.2 → XP_016858222.1 period circadian protein homolog 3 isoform X16
-
XM_017002735.2 → XP_016858224.1 period circadian protein homolog 3 isoform X17
-
XM_024450611.1 → XP_024306379.1 period circadian protein homolog 3 isoform X18
- Conserved Domains (3) summary
-
- cd00130
Location:110 → 202
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:900 → 1013
- Period_C; Period protein 2/3C-terminal region
- cl28033
Location:567 → 882
- Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
-
XM_024450586.1 → XP_024306354.1 period circadian protein homolog 3 isoform X2
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1081 → 1194
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:756 → 1065
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_024450587.1 → XP_024306355.1 period circadian protein homolog 3 isoform X5
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1075 → 1188
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:749 → 1059
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_024450588.1 → XP_024306356.1 period circadian protein homolog 3 isoform X7
- Conserved Domains (3) summary
-
- cd00130
Location:285 → 377
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1074 → 1187
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:749 → 1058
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_017002723.2 → XP_016858212.1 period circadian protein homolog 3 isoform X3
-
XM_017002724.2 → XP_016858213.1 period circadian protein homolog 3 isoform X4
-
XM_017002726.2 → XP_016858215.1 period circadian protein homolog 3 isoform X8
-
XM_024450590.1 → XP_024306358.1 period circadian protein homolog 3 isoform X9
- Conserved Domains (3) summary
-
- cd00130
Location:284 → 376
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam12114
Location:1073 → 1186
- Period_C; Period protein 2/3C-terminal region
- cl25496
Location:748 → 1057
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
-
XM_017002732.1 → XP_016858221.1 period circadian protein homolog 3 isoform X15
-
XM_017002738.2 → XP_016858227.1 period circadian protein homolog 3 isoform X21
-
XM_017002737.1 → XP_016858226.1 period circadian protein homolog 3 isoform X20
-
XM_017002729.1 → XP_016858218.1 period circadian protein homolog 3 isoform X12