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rho transcription termination factor Rho [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 880855, updated on 11-Sep-2024

Summary

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Gene symbol
rho
Gene description
transcription termination factor Rho
Locus tag
PA5239
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (5898865..5900124, complement)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene CDP-6-deoxy-delta-3,4-glucoseen reductase Neighboring gene 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Neighboring gene O-antigen acetylase Neighboring gene thioredoxin Neighboring gene exopolyphosphatase Neighboring gene polyphosphate kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  2. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  3. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
  4. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article
  5. Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa. Filiatrault MJ, et al. Infect Immun, 2005 Jun. PMID 15908409, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables ATP binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables ATP-dependent activity, acting on RNA ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription termination ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
transcription termination factor Rho
NP_253926.1
  • Product name confidence: class 2 (High similarity to functionally studied protein)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    5898865..5900124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_253926.1 transcription termination factor Rho [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_253926.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HTV1
    Conserved Domains (1) summary
    PRK09376
    Location:1 → 418
    rho; transcription termination factor Rho; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HTV1.1

Gene LinkOut

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Research Materials