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rmlC dTDP-4-dehydrorhamnose 3,5-epimerase [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 879991, updated on 30-Jul-2025
Gene symbol
rmlC
Gene description
dTDP-4-dehydrorhamnose 3,5-epimerase
Locus tag
PA5164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Try the new Transcripts and proteins table
Sequence:
NC_002516.2 (5813122..5813667)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene dTDP-D-glucose 4,6-dehydratase Neighboring gene dTDP-4-dehydrorhamnose reductase Neighboring gene glucose-1-phosphate thymidylyltransferase Neighboring gene two-component sensor Neighboring gene two-component response regulator Neighboring gene C4-dicarboxylate-binding protein

Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. RmlC, a C3' and C5' carbohydrate epimerase, appears to operate via an intermediate with an unusual twist boat conformation. Dong C, et al. J Mol Biol, 2007 Jan 5. PMID 17046787, Free PMC Article
  2. Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa. Rahim R, et al. Microbiology (Reading), 2000 Nov. PMID 11065359
  3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables dTDP-4-dehydrorhamnose 3,5-epimerase activity EXP
Inferred from Experiment
more info
 PubMed 
enables dTDP-4-dehydrorhamnose 3,5-epimerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dTDP-4-dehydrorhamnose 3,5-epimerase activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in dTDP-rhamnose biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in dTDP-rhamnose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipopolysaccharide biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in lipopolysaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipopolysaccharide core region biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in polysaccharide biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Preferred Names
dTDP-4-dehydrorhamnose 3,5-epimerase
NP_253851.1
  • Product name confidence: class 2 (High similarity to functionally studied protein)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    5813122..5813667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_253851.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_253851.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HU21
    Conserved Domains (1) summary
    TIGR01221
    Location:2 → 178
    rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HU21.1

Gene LinkOut

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