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rmlB dTDP-D-glucose 4,6-dehydratase [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 879982, updated on 11-Sep-2024
Gene symbol
rmlB
Gene description
dTDP-D-glucose 4,6-dehydratase
Locus tag
PA5161
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Sequence:
NC_002516.2 (5810281..5811339)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene drug efflux transporter Neighboring gene tRNA-Thr Neighboring gene dTDP-4-dehydrorhamnose reductase Neighboring gene glucose-1-phosphate thymidylyltransferase Neighboring gene dTDP-4-dehydrorhamnose 3,5-epimerase

Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa. Rahim R, et al. Microbiology (Reading), 2000 Nov. PMID 11065359
  2. Characterization of dTDP-4-dehydrorhamnose 3,5-epimerase and dTDP-4-dehydrorhamnose reductase, required for dTDP-L-rhamnose biosynthesis in Salmonella enterica serovar Typhimurium LT2. Graninger M, et al. J Biol Chem, 1999 Aug 27. PMID 10455186
  3. Identification and characterization of the dTDP-rhamnose biosynthesis and transfer genes of the lipopolysaccharide-related rfb locus in Leptospira interrogans serovar Copenhageni. Mitchison M, et al. J Bacteriol, 1997 Feb. PMID 9023210, Free PMC Article
  4. Genetic analysis of the dTDP-rhamnose biosynthesis region of the Escherichia coli VW187 (O7:K1) rfb gene cluster: identification of functional homologs of rfbB and rfbA in the rff cluster and correct location of the rffE gene. Marolda CL, et al. J Bacteriol, 1995 Oct. PMID 7559340, Free PMC Article
  5. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within O antigen biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within dTDP-rhamnose biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within lipopolysaccharide core region biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Preferred Names
dTDP-D-glucose 4,6-dehydratase
NP_253848.1
  • Product name confidence: class 2 (High similarity to functionally studied protein)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    5810281..5811339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_253848.1 dTDP-D-glucose 4,6-dehydratase [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_253848.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    COG1088
    Location:1 → 352
    RfbB; dTDP-D-glucose 4,6-dehydratase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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