U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

popD translocator outer membrane protein PopD [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 879358, updated on 24-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
popD
Gene description
translocator outer membrane protein PopD
Locus tag
PA1709
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_002516.2 (1854849..1855736)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene type III secretion protein PcrV Neighboring gene regulatory protein PcrH Neighboring gene translocator protein PopB Neighboring gene exoenzyme S synthesis protein ExsC Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A translocator-specific export signal establishes the translocator-effector secretion hierarchy that is important for type III secretion system function. Tomalka AG, et al. Mol Microbiol, 2012 Dec. PMID 23121689, Free PMC Article
  2. Type 3 Secretion Translocators Spontaneously Assemble a Hexadecameric Transmembrane Complex. Romano FB, et al. J Biol Chem, 2016 Mar 18. PMID 26786106, Free PMC Article
  3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The interaction between PopB and PopD guide the assembly of a unique hetero-oligomer in membranes.
    Title: Type 3 Secretion Translocators Spontaneously Assemble a Hexadecameric Transmembrane Complex.
  2. Two novel signals in PopD, one proximal to the chaperone binding site and one at the very C-terminus of the protein, are required for export of PopD before effector proteins.
    Title: A translocator-specific export signal establishes the translocator-effector secretion hierarchy that is important for type III secretion system function.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables protein-folding chaperone binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within translocation of peptides or proteins into host IGI
Inferred from Genetic Interaction
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
translocator outer membrane protein PopD
NP_250400.1
  • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    1854849..1855736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_250400.1 translocator outer membrane protein PopD [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_250400.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3M5DQX2, O30530
    Conserved Domains (1) summary
    pfam05844
    Location:7 → 295
    YopD; YopD protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases