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hpcD 5-carboxymethyl-2-hydroxymuconate isomerase [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 878649, updated on 24-Aug-2024
Gene symbol
hpcD
Gene description
5-carboxymethyl-2-hydroxymuconate isomerase
Locus tag
PA4125
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Sequence:
NC_002516.2 (4613539..4613931)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase Neighboring gene homoprotocatechuate 2,3-dioxygenase Neighboring gene major facilitator superfamily transporter Neighboring gene 2-oxo-hepta-3-ene-1,7-dioic acid hydratase

Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  2. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  3. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
  4. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article
  5. Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa. Filiatrault MJ, et al. Infect Immun, 2005 Jun. PMID 15908409, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Preferred Names
5-carboxymethyl-2-hydroxymuconate isomerase
NP_252814.1
  • Product name confidence: class 2 (High similarity to functionally studied protein)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    4613539..4613931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_252814.1 5-carboxymethyl-2-hydroxymuconate isomerase [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_252814.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A367MHJ1
    Conserved Domains (1) summary
    pfam02962
    Location:2 → 125
    CHMI; 5-carboxymethyl-2-hydroxymuconate isomerase
Nucleotide Protein
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