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vreI ECF sigma factor VreI [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 878410, updated on 24-Aug-2024
Gene symbol
vreI
Gene description
ECF sigma factor VreI
Locus tag
PA0675
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Sequence:
NC_002516.2 (734872..735417)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene heme oxygenase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene sigma factor regulator VreR Neighboring gene HxcW pseudopilin Neighboring gene HxcU pseudopilin

Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa σvreI ECF factor and its target genes. Faure LM, et al. Microbiology (Reading), 2013 Jul. PMID 23657684
  2. A Novel extracytoplasmic function (ECF) sigma factor regulates virulence in Pseudomonas aeruginosa. Llamas MA, et al. PLoS Pathog, 2009 Sep. PMID 19730690, Free PMC Article
  3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa sigmavreI ECF factor and its target genes.
    Title: Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa σvreI ECF factor and its target genes.
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Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables sigma factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol NAS
Non-traceable Author Statement
more info
 PubMed 
Preferred Names
ECF sigma factor VreI
NP_249366.1
  • Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    734872..735417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_249366.1 ECF sigma factor VreI [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_249366.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A367MD55
    Conserved Domains (1) summary
    COG1595
    Location:1 → 172
    RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]
Nucleotide Protein
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