U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pks38 beta-ketoacyl synthase family protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8627906, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
pks38
Gene description
beta-ketoacyl synthase family protein
Primary source
dictyBase:DDB_G0290937
Locus tag
DDB_G0290937
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0189163; DDBDRAFT_0235304; DDB_0189163; DDB_0235304
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_007091.3 (4772842..4782775, complement)

Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_007091.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Names
beta-ketoacyl synthase family protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007091.3 Reference assembly

    Range
    4772842..4782775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_630398.1 → XP_635490.1  hypothetical protein DDB_G0290937 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_635490.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54FD2
    Conserved Domains (12) summary
    cd05195
    Location:1933 → 2253
    enoyl_red; enoyl reductase of polyketide synthase
    cd05235
    Location:2722 → 3060
    SDR_e1; extended (e) SDRs, subgroup 1
    cd08954
    Location:2283 → 2526
    KR_1_FAS_SDR_x; beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 1, complex (x) SDRs
    smart00827
    Location:566 → 856
    PKS_AT; Acyl transferase domain in polyketide synthase (PKS) enzymes
    smart00829
    Location:1937 → 2253
    PKS_ER; Enoylreductase
    COG0500
    Location:1434 → 1661
    SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
    COG3321
    Location:9 → 1045
    PksD; Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism]
    cd00833
    Location:10 → 438
    PKS; polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or ...
    pfam00550
    Location:2569 → 2614
    PP-binding; Phosphopantetheine attachment site
    pfam08242
    Location:1488 → 1603
    Methyltransf_12; Methyltransferase domain
    cl00509
    Location:960 → 1244
    hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
    cl21454
    Location:1575 → 1927
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases