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msh3 DNA mismatch repair protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8623184, updated on 11-Apr-2024

Summary

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Gene symbol
msh3
Gene description
DNA mismatch repair protein
Primary source
dictyBase:DDB_G0281683
Locus tag
DDB_G0281683
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0204604; DDBDRAFT_0232960; DDB_0204604; DDB_0232960
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_007089.4 (4806161..4810447)

Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S26 Neighboring gene RING zinc finger-containing protein Neighboring gene NOL1/NOP2/Sun family protein Neighboring gene RNA recognition motif-containing protein RRM

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007089.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA insertion or deletion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA recombination ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
  
involved_in mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mismatch repair ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in mitotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within mitotic recombination ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within removal of nonhomologous ends ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of MutSbeta complex ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
DNA mismatch repair protein
XP_001134558.1
  • mutS homolog

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007089.4 Reference assembly

    Range
    4806161..4810447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001134558.1 → XP_001134558.1  hypothetical protein DDB_G0281683 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_001134558.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q1ZXH0
    Conserved Domains (5) summary
    COG0249
    Location:454 → 1416
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam00488
    Location:1125 → 1374
    MutS_V; MutS domain V
    pfam01624
    Location:454 → 567
    MutS_I; MutS domain I
    pfam05188
    Location:616 → 723
    MutS_II; MutS domain II
    pfam05192
    Location:790 → 910
    MutS_III; MutS domain III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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