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plbF [ Dictyostelium discoideum AX4 ]

Gene ID: 8619779, updated on 22-Aug-2024

Summary

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Official Symbol
plbF
Primary source
dictyBase:DDB_G0275125
Locus tag
DDB_G0275125
See related
AmoebaDB:DDB_G0275125; VEuPathDB:DDB_G0275125
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0167494; DDBDRAFT_0231381; DDB_0167494; DDB_0231381
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_007088.5 (4991620..4993493)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene hypothetical protein Neighboring gene tRNA-Trp Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphatidylethanolamine catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within phosphatidylinositol catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in phospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within phospholipid catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phospholipase B-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    4991620..4993493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_638644.1 → XP_643736.1  phospholipase B-like protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_643736.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q554H5, Q8T1G1
    Conserved Domains (1) summary
    pfam04916
    Location:9 → 558
    Phospholip_B; Phospholipase B
Nucleotide Protein
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Gene LinkOut

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