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RTR1 RNA polymerase II subunit B1 CTD phosphatase RTR1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 856882, updated on 5-Jun-2017
Gene symbol
RTR1
Gene description
RNA polymerase II subunit B1 CTD phosphatase RTR1
Primary source
SGD:S000000941
Locus tag
YER139C
Gene type
protein coding
RNA name
RNA polymerase II subunit B1 CTD phosphatase RTR1
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See RTR1 in Map Viewer
Location:
chromosome: V
Exon count:
1
Sequence:
Chromosome: V; NC_001137.3 (450563..451243, complement)

Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene gag-pol fusion protein Neighboring gene gag protein Neighboring gene hypothetical protein Neighboring gene Emp65p Neighboring gene Cox15p

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
CTD phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Names
RNA polymerase II subunit B1 CTD phosphatase RTR1
NP_011066.3
  • CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif required for function and conserved in eukaryotes; shuttles between the nucleus and cytoplasm; RTR1 has a paralog, RTR2, that arose from the whole genome duplication

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001137.3 Reference assembly

    Range
    450563..451243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179029.3NP_011066.3  TPA: RNA polymerase II subunit B1 CTD phosphatase RTR1 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_011066.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P40084
    Conserved Domains (1) summary
    pfam04181
    Location:53128
    RPAP2_Rtr1; Rtr1/RPAP2 family
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