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JHD1 [Histone H3]-lysine-36 demethylase [ Saccharomyces cerevisiae S288C ]

Gene ID: 856777, updated on 9-Sep-2018

Summary

Gene symbol
JHD1
Gene description
[Histone H3]-lysine-36 demethylase
Primary source
SGD:S000000853
Locus tag
YER051W
Gene type
protein coding
RNA name
[Histone H3]-lysine-36 demethylase
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
KDM2

Genomic context

See JHD1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
1
Sequence:
Chromosome: V; NC_001137.3 (254656..256134)

Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene oxidative DNA demethylase Neighboring gene mitochondrial 37S ribosomal protein RSM18 Neighboring gene aspartate kinase Neighboring gene Cu/Pi carrier

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 
histone demethylase activity (H3-K36 specific) IDA
Inferred from Direct Assay
more info
PubMed 
histone demethylase activity (H3-K36 specific) IEA
Inferred from Electronic Annotation
more info
 
histone demethylase activity (H3-K36 specific) IMP
Inferred from Mutant Phenotype
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
methylated histone binding IDA
Inferred from Direct Assay
more info
PubMed 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
histone H3-K36 demethylation IEA
Inferred from Electronic Annotation
more info
 
histone demethylation IDA
Inferred from Direct Assay
more info
PubMed 
histone demethylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription elongation from RNA polymerase II promoter IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
[Histone H3]-lysine-36 demethylase
NP_010971.1
  • JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001137.3 Reference assembly

    Range
    254656..256134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178942.1NP_010971.1  TPA: [Histone H3]-lysine-36 demethylase [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_010971.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P40034
    Conserved Domains (2) summary
    smart00249
    Location:669
    PHD; PHD zinc finger
    smart00558
    Location:278320
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
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