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SUV3 ATP-dependent RNA helicase SUV3 [ Saccharomyces cerevisiae S288C ]

Gene ID: 856078, updated on 9-Jun-2019

Summary

Gene symbol
SUV3
Gene description
ATP-dependent RNA helicase SUV3
Primary source
SGD:S000005950
Locus tag
YPL029W
Gene type
protein coding
RNA name
ATP-dependent RNA helicase SUV3
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
LPB2

Genomic context

See SUV3 in Genome Data Viewer
Location:
chromosome: XVI
Exon count:
1
Sequence:
Chromosome: XVI; NC_001148.4 (495506..497719)

Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene cyclin-dependent serine/threonine-protein kinase PHO85 Neighboring gene tRNA (uracil) methyltransferase Neighboring gene acetyl-CoA C-acetyltransferase Neighboring gene Sma1p

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the SUV3 gene: The SUV3 gene is conserved in S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA helicase activity IDA
Inferred from Direct Assay
more info
PubMed 
RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to exoribonuclease II activity IDA
Inferred from Direct Assay
more info
PubMed 
helicase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on acid anhydrides IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Group I intron splicing IGI
Inferred from Genetic Interaction
more info
PubMed 
RNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA phosphodiester bond hydrolysis, exonucleolytic IEA
Inferred from Electronic Annotation
more info
 
mitochondrial DNA replication IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial RNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial RNA catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with mitochondrial chromosome IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial degradosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial degradosome IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 
mitochondrion HDA PubMed 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ATP-dependent RNA helicase SUV3
NP_015296.1
  • ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; expression of a processed form of human homolog SUPV3L1 carrying an N-terminal deletion of 46 amino acids rescues yeast suv3 null mutant

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001148.4 Reference assembly

    Range
    495506..497719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183843.1NP_015296.1  TPA: ATP-dependent RNA helicase SUV3 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_015296.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P32580
    Conserved Domains (2) summary
    COG0513
    Location:80549
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam12513
    Location:666710
    SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal
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