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SCW10 putative family 17 glucosidase [ Saccharomyces cerevisiae S288C ]

Gene ID: 855352, updated on 11-Apr-2024

Summary

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Gene symbol
SCW10
Gene description
putative family 17 glucosidase
Primary source
SGD:S000004921
Locus tag
YMR305C
See related
AllianceGenome:SGD:S000004921
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable 1,3-beta-glucanosyltransferase activity and glucan endo-1,3-beta-D-glucosidase activity. Involved in conjugation with cellular fusion. Located in extracellular region and fungal-type cell wall. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (879063..880232, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase ADH2 Neighboring gene ubiquitin-specific protease UBP15 Neighboring gene putative 1,3-beta-D-glucan synthase Neighboring gene 1,3-beta-glucanosyltransferase GAS1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Scw10p, a cell-wall glucanase/transglucosidase important for cell-wall stability in Saccharomyces cerevisiae. Sestak S, et al. Microbiology (Reading), 2004 Oct. PMID 15470100
  2. New potential cell wall glucanases of Saccharomyces cerevisiae and their involvement in mating. Cappellaro C, et al. J Bacteriol, 1998 Oct. PMID 9748433, Free PMC Article
  3. Binding assay for incorporation of alkali-extractable proteins in the Saccharomyces cerevisiae cell wall. Teparić R, et al. Yeast, 2007 Apr. PMID 17315268
  4. Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling. Zeitlinger J, et al. Cell, 2003 May 2. PMID 12732146
  5. Anhydrobiosis in yeast: cell wall mannoproteins are important for yeast Saccharomyces cerevisiae resistance to dehydration. Borovikova D, et al. Yeast, 2016 Aug. PMID 27510749

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glucosidase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in cell wall organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
  
involved_in conjugation with cellular fusion IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery HDA PubMed 
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
is_active_in fungal-type cell wall IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in fungal-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in fungal-type cell wall IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative family 17 glucosidase
NP_014035.1
  • Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p; SWC10 has a paralog, SCW4, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    879063..880232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182815.1 → NP_014035.1  TPA: putative family 17 glucosidase [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014035.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W0D2, Q04951
    UniProtKB/TrEMBL
    A0A6A5PQ89, A6ZN21, B3LMJ3, C7GPV8, C8ZFH4, N1P635
    Conserved Domains (1) summary
    COG5309
    Location:92 → 389
    Scw11; Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q04951.1

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