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UBX4 Ubx4p [ Saccharomyces cerevisiae S288C ]

Gene ID: 855089, updated on 9-Sep-2018

Summary

Gene symbol
UBX4
Gene description
Ubx4p
Primary source
SGD:S000004671
Locus tag
YMR067C
Gene type
protein coding
RNA name
Ubx4p
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
CUI1

Genomic context

See UBX4 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (404323..405573, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Kar5p Neighboring gene Sov1p Neighboring gene Avo2p Neighboring gene Nat4p

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
protein-containing complex binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
sporulation resulting in formation of a cellular spore IMP
Inferred from Mutant Phenotype
more info
PubMed 
ubiquitin-dependent ERAD pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
ubiquitin-dependent ERAD pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm HDA PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
extrinsic component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
nucleus HDA PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Ubx4p
NP_013783.1
  • UBX domain-containing protein that interacts with Cdc48p; involved in degradation of polyubiquitinated proteins via the ERAD (ER-associated degradation) pathway; modulates the Cdc48p-Nplp-Ufd1p AAA ATPase complex during its role in delivery of misfolded proteins to the proteasome; protein abundance increases in response to DNA replication stress

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    404323..405573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182565.1NP_013783.1  TPA: Ubx4p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013783.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P54730
    Conserved Domains (2) summary
    smart00166
    Location:277351
    UBX; Domain present in ubiquitin-regulatory proteins
    pfam11470
    Location:671
    TUG-UBL1; TUG ubiquitin-like domain
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