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ZNF518B zinc finger protein 518B [ Homo sapiens (human) ]

Gene ID: 85460, updated on 1-Jun-2020

Summary

Official Symbol
ZNF518Bprovided by HGNC
Official Full Name
zinc finger protein 518Bprovided by HGNC
Primary source
HGNC:HGNC:29365
See related
Ensembl:ENSG00000178163 MIM:617734
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.9), thyroid (RPKM 3.6) and 24 other tissues See more
Orthologs

Genomic context

See ZNF518B in Genome Data Viewer
Location:
4p16.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (10439880..10457426, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (10441497..10459032, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986260 Neighboring gene dynein light chain Tctex-type 1 pseudogene Neighboring gene reactive intermediate imine deaminase A homolog pseudogene Neighboring gene uncharacterized LOC105374482 Neighboring gene cytokine dependent hematopoietic cell linker

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1729

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001375816.1NP_001362745.1  zinc finger protein 518B

    Status: VALIDATED

    Source sequence(s)
    AC110768
  2. NM_001375817.1NP_001362746.1  zinc finger protein 518B

    Status: VALIDATED

    Source sequence(s)
    AC110768
  3. NM_053042.3NP_444270.2  zinc finger protein 518B

    See identical proteins and their annotated locations for NP_444270.2

    Status: VALIDATED

    Source sequence(s)
    AC110768, AL833306, BC040874, CD656908
    Consensus CDS
    CCDS33960.1
    UniProtKB/Swiss-Prot
    Q9C0D4
    Related
    ENSP00000317614.3, ENST00000326756.4
    Conserved Domains (1) summary
    sd00017
    Location:137157
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    10439880..10457426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024454265.1XP_024310033.1  zinc finger protein 518B isoform X1

    Conserved Domains (1) summary
    sd00017
    Location:137157
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_024454264.1XP_024310032.1  zinc finger protein 518B isoform X1

    Conserved Domains (1) summary
    sd00017
    Location:137157
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_017008786.1XP_016864275.1  zinc finger protein 518B isoform X1

    UniProtKB/Swiss-Prot
    Q9C0D4
    Conserved Domains (1) summary
    sd00017
    Location:137157
    ZF_C2H2; C2H2 Zn finger [structural motif]
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