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SNF2 SWI/SNF catalytic subunit SNF2 [ Saccharomyces cerevisiae S288C ]

Gene ID: 854465, updated on 22-Aug-2021

Summary

Gene symbol
SNF2
Gene description
SWI/SNF catalytic subunit SNF2
Primary source
SGD:S000005816
Locus tag
YOR290C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
GAM1; HAF1; SWI2; TYE3
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Genomic context

See SNF2 in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (855147..860258, complement)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tRNA Neighboring gene putative acid anhydride hydrolase Neighboring gene uncharacterized protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent activity, acting on DNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ATP-dependent activity, acting on DNA IDA
Inferred from Direct Assay
more info
PubMed 
enables ATP-dependent activity, acting on DNA IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II-specific DNA-binding transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables lysine-acetylated histone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables lysine-acetylated histone binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables nucleosomal DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables rDNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA-dependent DNA replication IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in aggrephagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in chromatin remodeling IDA
Inferred from Direct Assay
more info
PubMed 
involved_in chromatin remodeling IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in chromatin remodeling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in double-strand break repair IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nucleosome mobilization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in nucleosome mobilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell adhesion involved in single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of invasive growth in response to glucose limitation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of mating type switching IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
involved_in response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in strand invasion IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of SWI/SNF complex IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SWI/SNF catalytic subunit SNF2
NP_014933.3
  • Catalytic subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    855147..860258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183709.3NP_014933.3  TPA: SWI/SNF catalytic subunit SNF2 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014933.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P22082
    Conserved Domains (5) summary
    cd05519
    Location:15501652
    Bromo_SNF2; Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of ...
    PLN03142
    Location:6501297
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam07529
    Location:617660
    HSA
    pfam08880
    Location:248281
    QLQ
    pfam14619
    Location:12991369
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
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