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CABS1 calcium binding protein, spermatid associated 1 [ Homo sapiens (human) ]

Gene ID: 85438, updated on 25-Jan-2022

Summary

Official Symbol
CABS1provided by HGNC
Official Full Name
calcium binding protein, spermatid associated 1provided by HGNC
Primary source
HGNC:HGNC:30710
See related
Ensembl:ENSG00000145309 MIM:618600; AllianceGenome:HGNC:30710
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLPH; C4orf35; NYD-SP26
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in flagellated sperm motility and spermatogenesis. Predicted to be located in acrosomal vesicle and sperm principal piece. Predicted to be active in mitochondrial inner membrane and motile cilium. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward testis (RPKM 46.0) See more
Orthologs
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Genomic context

See CABS1 in Genome Data Viewer
Location:
4q13.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (70334981..70337116)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (71200698..71202833)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene follicular dendritic cell secreted protein Neighboring gene casein kappa Neighboring gene submaxillary gland androgen regulated protein 3A Neighboring gene submaxillary gland androgen regulated protein 3B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32897

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables calcium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in flagellated sperm motility ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in motile cilium ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in sperm principal piece ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
calcium-binding and spermatid-specific protein 1
Names
calcium-binding protein, sperm-specific 1
calcium-binding protein, spermatid-specific 1
casein-like phosphoprotein
testis development protein NYD-SP26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033122.4NP_149113.3  calcium-binding and spermatid-specific protein 1

    See identical proteins and their annotated locations for NP_149113.3

    Status: VALIDATED

    Source sequence(s)
    AF380838, BX098854, DB027445
    Consensus CDS
    CCDS3539.1
    UniProtKB/Swiss-Prot
    Q96KC9
    Related
    ENSP00000273936.4, ENST00000273936.6
    Conserved Domains (1) summary
    pfam15367
    Location:1395
    CABS1; Calcium-binding and spermatid-specific protein 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    70334981..70337116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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