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SME1 mRNA splicing protein SME1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 854330, updated on 9-Sep-2018

Summary

Gene symbol
SME1
Gene description
mRNA splicing protein SME1
Primary source
SGD:S000005685
Locus tag
YOR159C
Gene type
protein coding
RNA name
mRNA splicing protein SME1
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces

Genomic context

See SME1 in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (633282..633566, complement)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene proteasome core particle subunit beta 2 Neighboring gene mitochondrial 37S ribosomal protein PET123 Neighboring gene Mtr10p Neighboring gene Pns1p

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
splicing factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IPI
Inferred from Physical Interaction
more info
PubMed 
spliceosomal snRNP assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U1 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U2-type prespliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U4 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U4/U6 x U5 tri-snRNP complex IDA
Inferred from Direct Assay
more info
PubMed 
U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U5 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mRNA splicing protein SME1
NP_014802.3
  • Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    633282..633566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183578.3NP_014802.3  TPA: mRNA splicing protein SME1 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014802.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q12330
    Conserved Domains (1) summary
    cd01718
    Location:792
    Sm_E; Sm protein E
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