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NUP1 FG-nucleoporin NUP1 [ Saccharomyces cerevisiae S288c ]

Gene ID: 854265, updated on 7-May-2017
Gene symbol
NUP1
Gene description
FG-nucleoporin NUP1
Primary source
SGD:S000005624
Locus tag
YOR098C
Gene type
protein coding
RNA name
FG-nucleoporin NUP1
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See NUP1 in Map Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (507948..511178, complement)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene ribosomal 40S subunit protein S7A Neighboring gene hypothetical protein Neighboring gene alpha-1,2-mannosyltransferase KTR1 Neighboring gene carnitine:acyl carnitine antiporter

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Function Evidence Code Pubs
nuclear localization sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleocytoplasmic transporter activity IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of nuclear pore IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
NLS-bearing protein import into nucleus IGI
Inferred from Genetic Interaction
more info
PubMed 
NLS-bearing protein import into nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA transport IEA
Inferred from Electronic Annotation
more info
 
poly(A)+ mRNA export from nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein import into nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
ribosomal large subunit export from nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IMP
Inferred from Mutant Phenotype
more info
PubMed 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane ISM
Inferred from Sequence Model
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear pore IDA
Inferred from Direct Assay
more info
PubMed 
nuclear pore IEA
Inferred from Electronic Annotation
more info
 
nuclear pore central transport channel IDA
Inferred from Direct Assay
more info
PubMed 
nuclear pore nuclear basket IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Names
FG-nucleoporin NUP1
NP_014741.1
  • FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of thenuclear pore complex (NPC) permeability barrier; possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; both NUP1 and NUP60 are homologous to human NUP153

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    507948..511178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183517.1NP_014741.1  TPA: FG-nucleoporin NUP1 [Saccharomyces cerevisiae S288c]

    See identical proteins and their annotated locations for NP_014741.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P20676
    Conserved Domains (2) summary
    COG5651
    Location:7371053
    COG5651; PPE-repeat protein [Function unknown]
    pfam10599
    Location:9341076
    Nup_retrotrp_bd; Retro-transposon transporting motif
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