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RKI1 ribose-5-phosphate isomerase RKI1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 854262, updated on 6-Oct-2020

Summary

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Gene symbol
RKI1
Gene description
ribose-5-phosphate isomerase RKI1
Primary source
SGD:S000005621
Locus tag
YOR095C
Gene type
protein coding
RNA name
ribose-5-phosphate isomerase RKI1
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces

Genomic context

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See RKI1 in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (503552..504328, complement)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Cmr2p Neighboring gene Arf family GTPase ARF3 Neighboring gene ribosomal 40S subunit protein S7A Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001147.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archaeal and bacterial enzymes. Graille M, et al. Biochimie, 2005 Aug. PMID 16054529
  2. Pyridoxine biosynthesis in yeast: participation of ribose 5-phosphate ketol-isomerase. Kondo H, et al. Biochem J, 2004 Apr 1. PMID 14690456, Free PMC Article
  3. Cloning and characterization of the first two genes of the non-oxidative part of the Saccharomyces cerevisiae pentose-phosphate pathway. Miosga T, et al. Curr Genet, 1996 Nov. PMID 8929392
  4. Regulation of tubulin polypeptides and microtubule function: Luv1p [correction of Rki1p] interacts with the beta-tubulin binding protein Rbl2p. Smith AM, et al. Chromosoma, 1998 Dec. PMID 9914379
  5. Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. MacGilvray ME, et al. PLoS Comput Biol, 2018 May. PMID 29738528, Free PMC Article

See all (22) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

  • Homologs of the RKI1 gene: The RKI1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, A.thaliana, and frog.

Gene Ontology Provided by GO

Function Evidence Code Pubs
isomerase activity IEA
Inferred from Electronic Annotation
more info
  
ribose-5-phosphate isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
  
ribose-5-phosphate isomerase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
D-ribose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
  
pentose-phosphate shunt IMP
Inferred from Mutant Phenotype
more info
 PubMed 
pentose-phosphate shunt, non-oxidative branch IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
  
pyridoxine biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
cytoplasm HDA PubMed 
intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
nucleus HDA PubMed 

General protein information

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Preferred Names
ribose-5-phosphate isomerase RKI1
NP_014738.1
  • Ribose-5-phosphate ketol-isomerase; catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    503552..504328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183514.1 → NP_014738.1  TPA: ribose-5-phosphate isomerase RKI1 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014738.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q12189
    Conserved Domains (1) summary
    TIGR00021
    Location:22 → 253
    rpiA; ribose 5-phosphate isomerase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q12189.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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