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SHISAL1 shisa like 1 [ Homo sapiens (human) ]

Gene ID: 85352, updated on 11-Jun-2021

Summary

Official Symbol
SHISAL1provided by HGNC
Official Full Name
shisa like 1provided by HGNC
Primary source
HGNC:HGNC:29335
See related
Ensembl:ENSG00000138944
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA1644
Expression
Biased expression in endometrium (RPKM 16.5), brain (RPKM 11.5) and 7 other tissues See more
Orthologs
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Genomic context

See SHISAL1 in Genome Data Viewer
Location:
22q13.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (44243665..44331693, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (44639545..44708831, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985570 Neighboring gene parvin gamma Neighboring gene uncharacterized LOC107985571 Neighboring gene uncharacterized LOC101927499 Neighboring gene long intergenic non-protein coding RNA 1656 Neighboring gene MRPS18C pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC125851, MGC125852

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099294.2NP_001092764.1  protein shisa-like-1 precursor

    See identical proteins and their annotated locations for NP_001092764.1

    Status: VALIDATED

    Source sequence(s)
    AL022339, AL031595, AL591914, AL671760
    Consensus CDS
    CCDS43025.1
    UniProtKB/Swiss-Prot
    Q3SXP7
    Related
    ENSP00000370568.4, ENST00000381176.5
    Conserved Domains (1) summary
    pfam13908
    Location:3171
    Shisa; Wnt and FGF inhibitory regulator

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    44243665..44331693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005261790.3XP_005261847.1  protein shisa-like-1 isoform X1

    See identical proteins and their annotated locations for XP_005261847.1

    UniProtKB/Swiss-Prot
    Q3SXP7
    Conserved Domains (1) summary
    pfam13908
    Location:3171
    Shisa; Wnt and FGF inhibitory regulator
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