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BAGE5 BAGE family member 5 [ Homo sapiens (human) ]

Gene ID: 85316, updated on 10-Oct-2023

Summary

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Official Symbol
BAGE5provided by HGNC
Official Full Name
BAGE family member 5provided by HGNC
Primary source
HGNC:HGNC:15732
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT2.5
Annotation information
Annotation category: only annotated on patches unit in reference assembly
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Genomic context

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See BAGE5 in Genome Data Viewer
Location:
13cen
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 (PATCHES) NW_011332699.1 (76210..170143)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (13741153..13836693, complement)

NW_011332699.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 36B-like Neighboring gene vomeronasal 1 receptor 111 pseudogene Neighboring gene family with sequence similarity 230 member C Neighboring gene eukaryotic translation initiation factor 3 subunit F pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BAGE: a new gene encoding an antigen recognized on human melanomas by cytolytic T lymphocytes. Boël P, et al. Immunity, 1995 Feb. PMID 7895173
  2. BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure. Ruault M, et al. Genomics, 2003 Apr. PMID 12676563
  3. New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile. Ruault M, et al. Eur J Hum Genet, 2002 Dec. PMID 12461691

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Markers

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B melanoma antigen 5
Names
B melanoma antigen family member 5
cancer/testis antigen 2.5
cancer/testis antigen family 2, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182484.2 → NP_872290.1  B melanoma antigen 5 precursor

    See identical proteins and their annotated locations for NP_872290.1

    Status: VALIDATED

    Source sequence(s)
    AL161418
    UniProtKB/Swiss-Prot
    Q86Y27
    UniProtKB/TrEMBL
    Q29RY1
    Conserved Domains (1) summary
    pfam08180
    Location:1 → 28
    BAGE; B melanoma antigen family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332699.1 Reference GRCh38.p14 PATCHES

    Range
    76210..170143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    13741153..13836693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86Y27.1 GenPept UniProtKB/Swiss-Prot:Q86Y27

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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