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gag protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 851853, updated on 30-Jul-2025
Official Full Name
gag protein
Primary source
SGD:S000007394
Locus tag
YDR261C-C
See related
AllianceGenome:SGD:S000007394; FungiDB:YDR261C-C; VEuPathDB:YDR261C-C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be involved in retrotransposition. Predicted to act upstream of or within viral translational frameshifting. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2025]
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Location:
chromosome: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_001136.10 (991027..992349, complement)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene tRNA-Ser Neighboring gene gag protein Neighboring gene gag-pol fusion protein Neighboring gene gag-pol fusion protein Neighboring gene tRNA-Gly Neighboring gene uncharacterized protein

Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Happy together: the life and times of Ty retrotransposons and their hosts. Lesage P, et al. Cytogenet Genome Res, 2005. PMID 16093660
  2. Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. Carr M, et al. PLoS One, 2012. PMID 23226439, Free PMC Article
  3. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Kim JM, et al. Genome Res, 1998 May. PMID 9582191
  4. Def1 interacts with TFIIH and modulates RNA polymerase II transcription. Damodaren N, et al. Proc Natl Acad Sci U S A, 2017 Dec 12. PMID 29180430, Free PMC Article
  5. Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. Sahasranaman A, et al. EMBO J, 2011 Sep 16. PMID 21926967, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in viral translational frameshifting IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
gag protein
NP_058149.1
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; Gag processing produces capsid proteins; in YDRCTy1-3 TYB is mutant and probably non-functional

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    991027..992349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184420.1 → NP_058149.1  TPA: gag protein

    See identical proteins and their annotated locations for NP_058149.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VSP5, O74302, P08405, Q07155
    Conserved Domains (1) summary
    pfam01021
    Location:17 → 114
    TYA; TYA transposon protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O74302.1

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