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UTP21 rRNA-processing protein UTP21 [ Saccharomyces cerevisiae S288C ]

Gene ID: 851125, updated on 5-Sep-2021

Summary

Gene symbol
UTP21
Gene description
rRNA-processing protein UTP21
Primary source
SGD:S000004401
Locus tag
YLR409C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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Genomic context

See UTP21 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (934414..937233, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Bls1p Neighboring gene inositol polyphosphate kinase VIP1 Neighboring gene gag protein Neighboring gene gag-pol fusion protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the UTP21 gene: The UTP21 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and frog.

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in rRNA processing IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in ribosomal small subunit biogenesis IC
Inferred by Curator
more info
PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of 90S preribosome HDA PubMed 
part_of Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of Pwp2p-containing subcomplex of 90S preribosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleolus HDA PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus HDA PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of small-subunit processome IDA
Inferred from Direct Assay
more info
PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
rRNA-processing protein UTP21
NP_013513.3
  • Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; synthetic defect with STI1 Hsp90 cochaperone; human homolog linked to glaucoma; Small Subunit processome is also known as SSU processome

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    934414..937233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182297.3NP_013513.3  TPA: rRNA-processing protein UTP21 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013513.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q06078
    Conserved Domains (4) summary
    cd00200
    Location:284613
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:464500
    7WD40; WD40 repeat [structural motif]
    pfam04192
    Location:695937
    Utp21; Utp21 specific WD40 associated putative domain
    cl29593
    Location:81377
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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