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UBI4 ubiquitin [ Saccharomyces cerevisiae S288C ]

Gene ID: 850620, updated on 5-Sep-2021

Summary

Gene symbol
UBI4
Gene description
ubiquitin
Primary source
SGD:S000003962
Locus tag
YLL039C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
SCD2; UB14
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Genomic context

See UBI4 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (64062..65207, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase iron-sulfur protein subunit SDH2 Neighboring gene membrane morphogenesis protein VPS13 Neighboring gene Ent4p Neighboring gene E3 ubiquitin-protein ligase PRP19

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the UBI4 gene: The UBI4 gene is conserved in zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables protein tag IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein tag IDA
Inferred from Direct Assay
more info
PubMed 
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein ubiquitination IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with peroxisome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ubiquitin
NP_013061.1
  • Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats; protein abundance increases in response to DNA replication stress

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    64062..65207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181859.1NP_013061.1  TPA: ubiquitin [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013061.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0CG63
    Conserved Domains (1) summary
    cd01803
    Location:77152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
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