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SRD1 Srd1p [ Saccharomyces cerevisiae S288C ]

Gene ID: 850377, updated on 8-Jun-2019

Summary

Gene symbol
SRD1
Gene description
Srd1p
Primary source
SGD:S000000611
Locus tag
YCR018C
Gene type
protein coding
RNA name
Srd1p
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces

Genomic context

See SRD1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_001135.5 (148238..148903, complement)

Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Cwh43p Neighboring gene tRNA Neighboring gene tRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
rRNA processing IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm HDA PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus HDA PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Srd1p
NP_009944.2
  • Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001135.5 Reference assembly

    Range
    148238..148903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178731.1NP_009944.2  TPA: Srd1p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_009944.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09007
    Conserved Domains (2) summary
    smart00401
    Location:163214
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam00320
    Location:168203
    GATA; GATA zinc finger
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