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SNHG12 small nucleolar RNA host gene 12 [ Homo sapiens (human) ]

Gene ID: 85028, updated on 23-Nov-2021

Summary

Official Symbol
SNHG12provided by HGNC
Official Full Name
small nucleolar RNA host gene 12provided by HGNC
Primary source
HGNC:HGNC:30062
See related
Ensembl:ENSG00000197989
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf79; PNAS-123; LINC00100; ASLNC04080; NCRNA00100
Summary
This gene produces a long RNA that is overexpressed in tumor cells. This RNA may promote tumorigenesis by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]
Expression
Ubiquitous expression in appendix (RPKM 11.0), spleen (RPKM 10.5) and 25 other tissues See more
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Genomic context

See SNHG12 in Genome Data Viewer
Location:
1p35.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (28578538..28582983, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (28905050..28909495, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11844 Neighboring gene Sharpr-MPRA regulatory region 11894 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene small nucleolar RNA, C/D box 99 Neighboring gene small nucleolar RNA, H/ACA box 16A Neighboring gene small nucleolar RNA, H/ACA box 61 Neighboring gene small nucleolar RNA, H/ACA box 44 Neighboring gene RAB42, member RAS oncogene family Neighboring gene TATA-box binding protein associated factor 12 Neighboring gene Sharpr-MPRA regulatory region 12118 Neighboring gene TAF12 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 100
  • small nucleolar RNA host gene 12 (non-protein coding)

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024127.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC068048, CB128668
  2. NR_146381.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC045792, CB128668
    Related
    ENST00000470977.6
  3. NR_146382.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC022205, BC045792
    Related
    ENST00000488745.5
  4. NR_146383.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC045792, BU947373, CB128668
  5. NR_146384.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL513497
    Related
    ENST00000461832.2
  6. NR_146385.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL513497
    Related
    ENST00000481220.6
  7. NR_146386.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL513497
    Related
    ENST00000483436.5
  8. NR_146387.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL513497

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    28578538..28582983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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