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CEP89 centrosomal protein 89 [ Homo sapiens (human) ]

Gene ID: 84902, updated on 17-Jun-2019

Summary

Official Symbol
CEP89provided by HGNC
Official Full Name
centrosomal protein 89provided by HGNC
Primary source
HGNC:HGNC:25907
See related
Ensembl:ENSG00000121289 MIM:615470
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CEP123; CCDC123
Expression
Ubiquitous expression in ovary (RPKM 2.9), endometrium (RPKM 2.6) and 25 other tissues See more
Orthologs

Genomic context

See CEP89 in Genome Data Viewer
Location:
19q13.11
Exon count:
22
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (32875925..32972024, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (33369904..33462930, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene tudor domain containing 12 Neighboring gene glial cells missing transcription factor 1 pseudogene Neighboring gene solute carrier family 7 member 9 Neighboring gene RN7SK pseudogene 22 Neighboring gene ribosomal protein L31 pseudogene 60 Neighboring gene FA core complex associated protein 24 Neighboring gene rhophilin Rho GTPase binding protein 2 Neighboring gene HNF1 motif-containing MPRA enhancer 165

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from BioSystems

  • Anchoring of the basal body to the plasma membrane, organism-specific biosystem (from REACTOME)
    Anchoring of the basal body to the plasma membrane, organism-specific biosystemCilium biogenesis is initiated by the docking of basal bodies, a centriole-derived organelle, to the plasma membrane (reviewed in Reiter et al, 2012). The centriole consists of a multiprotein core su...
  • Cilium Assembly, organism-specific biosystem (from REACTOME)
    Cilium Assembly, organism-specific biosystemCilia are membrane covered organelles that extend from the surface of eukaryotic cells. Cilia may be motile, such as respiratory cilia) or non-motile (such as the primary cilium) and are distinguishe...
  • Organelle biogenesis and maintenance, organism-specific biosystem (from REACTOME)
    Organelle biogenesis and maintenance, organism-specific biosystemThis module describes the biogenesis of organelles. Organelles are subcellular structures of distinctive morphology and function. The organelles of human cells include: mitochondria, endoplasmic reti...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ14640

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 
ciliary basal body-plasma membrane docking TAS
Traceable Author Statement
more info
 
cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 
non-motile cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
centriole IDA
Inferred from Direct Assay
more info
PubMed 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
ciliary transition fiber IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
cytosol TAS
Traceable Author Statement
more info
 
mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 
motile cilium IEA
Inferred from Electronic Annotation
more info
 
non-motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
 
spindle pole IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
centrosomal protein of 89 kDa
Names
centrosomal protein 123
centrosomal protein 89kDa
coiled-coil domain containing 123
coiled-coil domain-containing protein 123, mitochondrial

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032816.5NP_116205.3  centrosomal protein of 89 kDa

    See identical proteins and their annotated locations for NP_116205.3

    Status: VALIDATED

    Source sequence(s)
    AC008805, BC136328, BU196203, BU628988, DA040903, DB539713
    Consensus CDS
    CCDS32987.1
    UniProtKB/Swiss-Prot
    Q96ST8
    Related
    ENSP00000306105.4, ENST00000305768.10
    Conserved Domains (1) summary
    TIGR04211
    Location:233346
    SH3_and_anchor; SH3 domain protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    32875925..32972024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259344.3XP_005259401.1  centrosomal protein of 89 kDa isoform X1

    Conserved Domains (1) summary
    COG1196
    Location:238695
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  2. XM_024451745.1XP_024307513.1  centrosomal protein of 89 kDa isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:122346
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_017027398.1XP_016882887.1  centrosomal protein of 89 kDa isoform X2

RNA

  1. XR_935866.2 RNA Sequence

    Related
    ENST00000586984.6
  2. XR_002958372.1 RNA Sequence

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