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ZC3H10 zinc finger CCCH-type containing 10 [ Homo sapiens (human) ]

Gene ID: 84872, updated on 23-Nov-2021

Summary

Official Symbol
ZC3H10provided by HGNC
Official Full Name
zinc finger CCCH-type containing 10provided by HGNC
Primary source
HGNC:HGNC:25893
See related
Ensembl:ENSG00000135482
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZC3HDC10
Expression
Ubiquitous expression in testis (RPKM 6.2), ovary (RPKM 4.7) and 25 other tissues See more
Orthologs
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Genomic context

See ZC3H10 in Genome Data Viewer
Location:
12q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (56118266..56127514)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (56512050..56521298)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene proliferation-associated 2G4 Neighboring gene ribosomal protein L41 Neighboring gene extended synaptotagmin 1 Neighboring gene myosin light chain 6B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: ESYT1

Homology

Clone Names

  • FLJ14451

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables miRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger CCCH domain-containing protein 10
Names
zinc finger CCCH-type domain containing 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303124.2NP_001290053.1  zinc finger CCCH domain-containing protein 10

    See identical proteins and their annotated locations for NP_001290053.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC034102, BC018708, DA534848
    Consensus CDS
    CCDS8903.1
    UniProtKB/Swiss-Prot
    Q96K80
    Conserved Domains (2) summary
    smart00356
    Location:134158
    ZnF_C3H1; zinc finger
    pfam15743
    Location:236293
    SPATA1_C; Spermatogenesis-associated C-terminus
  2. NM_001303125.2NP_001290054.1  zinc finger CCCH domain-containing protein 10

    See identical proteins and their annotated locations for NP_001290054.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC034102, BC018708, HY035162
    Consensus CDS
    CCDS8903.1
    UniProtKB/Swiss-Prot
    Q96K80
    Conserved Domains (2) summary
    smart00356
    Location:134158
    ZnF_C3H1; zinc finger
    pfam15743
    Location:236293
    SPATA1_C; Spermatogenesis-associated C-terminus
  3. NM_032786.3NP_116175.1  zinc finger CCCH domain-containing protein 10

    See identical proteins and their annotated locations for NP_116175.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the predominant transcript. All three variants encode the same protein.
    Source sequence(s)
    AC034102, BC018708
    Consensus CDS
    CCDS8903.1
    UniProtKB/Swiss-Prot
    Q96K80
    Related
    ENSP00000257940.2, ENST00000257940.7
    Conserved Domains (2) summary
    smart00356
    Location:134158
    ZnF_C3H1; zinc finger
    pfam15743
    Location:236293
    SPATA1_C; Spermatogenesis-associated C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    56118266..56127514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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