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C19orf48 chromosome 19 open reading frame 48 [ Homo sapiens (human) ]

Gene ID: 84798, updated on 20-Mar-2020

Summary

Official Symbol
C19orf48provided by HGNC
Official Full Name
chromosome 19 open reading frame 48provided by HGNC
Primary source
HGNC:HGNC:29667
See related
Ensembl:ENSG00000167747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in prostate (RPKM 26.8), bone marrow (RPKM 14.0) and 25 other tissues See more
Orthologs

Genomic context

See C19orf48 in Genome Data Viewer
Location:
19q13.33
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (50797693..50804853, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (51300961..51307974, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372440 Neighboring gene origin of replication 20mer1 Neighboring gene uncharacterized LOC105372439 Neighboring gene acid phosphatase 4 Neighboring gene small nucleolar RNA, C/D box 88B Neighboring gene small nucleolar RNA, C/D box 88A Neighboring gene small nucleolar RNA, C/D box 88C Neighboring gene long intergenic non-protein coding RNA 1869 Neighboring gene kallikrein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
uncharacterized protein C19orf48
Names
multidrug resistance-related protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290149.1NP_001277078.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277078.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript. All ten transcripts encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BG482545, BM478180, BM802982, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
    Related
    ENST00000598463.5
  2. NM_001290150.1NP_001277079.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277079.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM802982, BX362144, CF141966, DR762491
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  3. NM_001290151.1NP_001277080.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277080.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM802982, BX362144, CF146381, HY031063
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  4. NM_001290152.1NP_001277081.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277081.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM802982, BX283891, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  5. NM_001290153.1NP_001277082.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277082.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BG746959, BG746996, BM478180, BM802982, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  6. NM_001290154.1NP_001277083.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277083.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BG824338, BM478180, BM802982, BQ890364, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  7. NM_001290155.1NP_001277084.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_001277084.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM760737, BM802982, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  8. NM_032712.3NP_116101.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_116101.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM802982, CD247712
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
  9. NM_199249.2NP_954857.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_954857.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM802982, BX362144, CF146381
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
    Related
    ENSP00000375688.1, ENST00000391812.5
  10. NM_199250.2NP_954858.1  uncharacterized protein C19orf48

    See identical proteins and their annotated locations for NP_954858.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 3. All ten variants encode the same protein.
    Source sequence(s)
    AC010325, BC051842, BM478180, BM802982, BX362144, CF141966
    Consensus CDS
    CCDS12803.1
    UniProtKB/Swiss-Prot
    Q6RUI8
    UniProtKB/TrEMBL
    A0A024R4G9
    Related
    ENSP00000301419.3, ENST00000345523.9

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    50797693..50804853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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