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AFAP1-AS1 AFAP1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 84740, updated on 5-Dec-2021

Summary

Official Symbol
AFAP1-AS1provided by HGNC
Official Full Name
AFAP1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28141
See related
Ensembl:ENSG00000272620
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AFAP1AS; AFAP1-AS
Summary
This gene produces a long non-coding RNA that is overexpressed in tumor cells and may promote cancer cell metastasis. [provided by RefSeq, Dec 2017]
Expression
Broad expression in ovary (RPKM 2.9), stomach (RPKM 1.6) and 21 other tissues See more
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Genomic context

See AFAP1-AS1 in Genome Data Viewer
Location:
4p16.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (7754090..7778928)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (7755817..7780655)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene Sharpr-MPRA regulatory region 5388 Neighboring gene uncharacterized LOC107986258 Neighboring gene heart enhancer 19 Neighboring gene actin filament associated protein 1 Neighboring gene Sharpr-MPRA regulatory region 14367

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • AFAP1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026892.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC112254, BC004397, BC043614
    Related
    ENST00000608442.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    7754090..7778928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032654.1: Suppressed sequence

    Description
    NM_032654.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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