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Snurf SNRPN upstream reading frame [ Mus musculus (house mouse) ]

Gene ID: 84704, updated on 26-Sep-2022

Summary

Official Symbol
Snurfprovided by MGI
Official Full Name
SNRPN upstream reading frameprovided by MGI
Primary source
MGI:MGI:1891236
See related
Ensembl:ENSMUSG00000102627 AllianceGenome:MGI:1891236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2410045I01Rik
Summary
This gene is located within the mouse orthologous Prader-Willi Syndrome critical region and is imprinted and expressed from the paternal allele. This transcipt is thought to be bicistronic and can encode the small nuclear ribonucleoprotein polypeptide N (Snrpn) from a downstream open reading frame. The small protein represented by this gene is encoded by an evolutionarily-conserved upstream open reading frame and is localized to the nucleus. [provided by RefSeq, Mar 2017]
Expression
Biased expression in cerebellum adult (RPKM 239.9), cortex adult (RPKM 239.6) and 8 other tissues See more
Orthologs
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Genomic context

See Snurf in Genome Data Viewer
Location:
7; 7 B5
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (59632243..59654947, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (59982495..60005199, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 14 Neighboring gene small nucleolar RNA, C/D box 107 Neighboring gene small nucleolar RNA, C/D box 64 Neighboring gene small nuclear ribonucleoprotein N Neighboring gene pyruvate dehydrogenase complex, component X pseudogene Neighboring gene 1110014K08Rik pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC18604, MGC30325

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATPase binding IPI
Inferred from Physical Interaction
more info
 
Component Evidence Code Pubs
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
SNRPN upstream reading frame protein
Names
small nuclear ribonucleoprotein N

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033174.4NP_149409.1  SNRPN upstream reading frame protein

    See identical proteins and their annotated locations for NP_149409.1

    Status: VALIDATED

    Source sequence(s)
    AC167813, AC172750, BC132082, BY648312, CF751578
    Consensus CDS
    CCDS57553.1
    UniProtKB/Swiss-Prot
    Q924D8, Q9WU12
    UniProtKB/TrEMBL
    A0A6P5PZY7, A0A8C6H9C6
    Related
    ENSMUSP00000141531.2, ENSMUST00000194059.2
    Conserved Domains (1) summary
    pfam07192
    Location:271
    SNURF; SNURF/RPN4 protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    59632243..59654947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)