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CCDC54 coiled-coil domain containing 54 [ Homo sapiens (human) ]

Gene ID: 84692, updated on 10-Dec-2024

Summary

Official Symbol
CCDC54provided by HGNC
Official Full Name
coiled-coil domain containing 54provided by HGNC
Primary source
HGNC:HGNC:30703
See related
Ensembl:ENSG00000138483 AllianceGenome:HGNC:30703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SP17; NYD-SP17
Orthologs
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Genomic context

See CCDC54 in Genome Data Viewer
Location:
3q13.12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107377439..107378635)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110097142..110098338)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107096286..107097482)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene DPPA2 upstream binding RNA Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107003277-107004086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107004087-107004896 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107027390-107028318 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107034942-107035442 Neighboring gene CS pseudogene 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:107085622-107086821 Neighboring gene CCDC54 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107127150-107127650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107127651-107128151 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20202 Neighboring gene long intergenic non-protein coding RNA 1990

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
coiled-coil domain-containing protein 54
Names
sperm protein 17
testes development-related NYD-SP17
testicular tissue protein Li 33
testis development protein NYD-SP17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032600.3NP_115989.1  coiled-coil domain-containing protein 54

    See identical proteins and their annotated locations for NP_115989.1

    Status: VALIDATED

    Source sequence(s)
    AC063944, AK058091
    Consensus CDS
    CCDS2949.1
    UniProtKB/Swiss-Prot
    Q8NEL0, Q96A43
    UniProtKB/TrEMBL
    A0A140VJF9
    Related
    ENSP00000261058.1, ENST00000261058.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107377439..107378635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    110097142..110098338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)