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CCDC54 coiled-coil domain containing 54 [ Homo sapiens (human) ]

Gene ID: 84692, updated on 13-May-2022

Summary

Official Symbol
CCDC54provided by HGNC
Official Full Name
coiled-coil domain containing 54provided by HGNC
Primary source
HGNC:HGNC:30703
See related
Ensembl:ENSG00000138483 AllianceGenome:HGNC:30703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SP17; NYD-SP17
Orthologs
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Genomic context

See CCDC54 in Genome Data Viewer
Location:
3q13.12
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107377439..107378635)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110097142..110098338)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107096286..107097482)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CS pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 4803 Neighboring gene CCDC54 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 1990

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25362

General protein information

Preferred Names
coiled-coil domain-containing protein 54
Names
sperm protein 17
testes development-related NYD-SP17
testicular tissue protein Li 33
testis development protein NYD-SP17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032600.3NP_115989.1  coiled-coil domain-containing protein 54

    See identical proteins and their annotated locations for NP_115989.1

    Status: VALIDATED

    Source sequence(s)
    AC063944, AK058091
    Consensus CDS
    CCDS2949.1
    UniProtKB/Swiss-Prot
    Q8NEL0
    UniProtKB/TrEMBL
    A0A140VJF9
    Related
    ENSP00000261058.1, ENST00000261058.3
    Conserved Domains (1) summary
    cl23887
    Location:84204
    DUF4349; Domain of unknown function (DUF4349)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    107377439..107378635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    110097142..110098338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)