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DSCR8 Down syndrome critical region 8 [ Homo sapiens (human) ]

Gene ID: 84677, updated on 11-Jun-2021

Summary

Official Symbol
DSCR8provided by HGNC
Official Full Name
Down syndrome critical region 8provided by HGNC
Primary source
HGNC:HGNC:16707
See related
Ensembl:ENSG00000198054 MIM:613396
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MMA1; MMA-1; MTAG2; MMA-1a; MMA-1b; CT25.1a; CT25.1b; C21orf65
Expression
Restricted expression toward testis (RPKM 8.9) See more
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Genomic context

See DSCR8 in Genome Data Viewer
Location:
21q22.13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (38121451..38156511)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (39493545..39528605)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 6 Neighboring gene VISTA enhancer hs1811 Neighboring gene Down syndrome critical region 4 Neighboring gene Sharpr-MPRA regulatory region 8394 Neighboring gene cutaneous T cell lymphoma-associated antigen 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • Down syndrome critical region 8 (non-protein coding)
  • Down syndrome critical region gene 8
  • cancer/testis antigen family 25, member 1a
  • cancer/testis antigen family 25, member 1b
  • malignant melanoma associated protein 1
  • malignant melanoma-associated 1
  • melanoma-testis-associated protein 2

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026838.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents the longest transcript.
    Source sequence(s)
    AJ783421, BC029353, BG189423
    Related
    ENST00000465532.5
  2. NR_026839.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon, compared to variant 4.
    Source sequence(s)
    AJ305085, BC029353, BG189423
    Related
    ENST00000478613.5
  3. NR_026840.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses two alternate splice sites, compared to variant 4.
    Source sequence(s)
    AJ306839, BC029353, BG189423
    Related
    ENST00000357704.8
  4. NR_026841.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) uses an alternate splice site, compared to variant 4.
    Source sequence(s)
    AJ297914, BC029353, BG189423
    Related
    ENST00000400477.7
  5. NR_026842.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and lacks an exon, compared to variant 4.
    Source sequence(s)
    BC015981, BC029353, BG189423
    Related
    ENST00000469658.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    38121451..38156511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032589.2: Suppressed sequence

    Description
    NM_032589.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NM_203428.1: Suppressed sequence

    Description
    NM_203428.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  3. NM_203429.1: Suppressed sequence

    Description
    NM_203429.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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