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CSPG4P2Y CSPG4 pseudogene 2 Y-linked [ Homo sapiens (human) ]

Gene ID: 84664, updated on 23-Nov-2021

Summary

Official Symbol
CSPG4P2Yprovided by HGNC
Official Full Name
CSPG4 pseudogene 2 Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:32424
See related
Ensembl:ENSG00000244231
Gene type
pseudo
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSPG4P2; CSPG4PY2; CSPG4LYP2
Summary
There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more centromeric copy. This gene is identical to the transcribed locus CSPG4P1Y, GeneID 114758, but is represented as non-transcribed because there is no representative transcript available in a public sequence database. [provided by RefSeq, Feb 2011]
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Genomic context

See CSPG4P2Y in Genome Data Viewer
Location:
Yq11.23
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (24183433..24187230, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (26329580..26333377, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 11, pseudogene Neighboring gene dynamin 1 pseudogene 24 Neighboring gene CSPG4 pseudogene 3 Y-linked Neighboring gene CHRFAM7A pseudogene 2 Neighboring gene GOLGA2 pseudogene 2 Y-linked Neighboring gene RNA, 7SL, cytoplasmic 818, pseudogene

Genomic regions, transcripts, and products

General gene information

Markers

Other Names

  • chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked
  • chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 2
  • chondroitin sulfate proteoglycan 4-like, Y-linked, centromeric

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004755.2 

    Range
    2372547..2376344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    24183433..24187230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_027933.1: Suppressed sequence

    Description
    NG_027933.1: This RefSeq was permanently suppressed because it is redundant with the annotation of GeneID: 84664 on NG_004755.2.
  2. NM_032577.1: Suppressed sequence

    Description
    NM_032577.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  3. NR_002194.1: Suppressed sequence

    Description
    NR_002194.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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