Format

Send to:

Choose Destination

TNRC18 trinucleotide repeat containing 18 [ Homo sapiens (human) ]

Gene ID: 84629, updated on 1-Jun-2020

Summary

Official Symbol
TNRC18provided by HGNC
Official Full Name
trinucleotide repeat containing 18provided by HGNC
Primary source
HGNC:HGNC:11962
See related
Ensembl:ENSG00000182095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAGL79; TNRC18A
Expression
Ubiquitous expression in kidney (RPKM 6.4), colon (RPKM 6.2) and 25 other tissues See more
Orthologs

Genomic context

See TNRC18 in Genome Data Viewer
Location:
7p22.1
Exon count:
37
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (5306790..5423843, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (5346421..5463177, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 215, pseudogene Neighboring gene WD repeat domain, phosphoinositide interacting 2 Neighboring gene solute carrier family 29 member 4 Neighboring gene uncharacterized LOC100129484 Neighboring gene F-box and leucine rich repeat protein 18 Neighboring gene microRNA 589

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1856

Gene Ontology Provided by GOA

Function Evidence Code Pubs
chromatin binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
mitochondrion IDA
Inferred from Direct Assay
more info
 
nuclear membrane IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
trinucleotide repeat-containing gene 18 protein
Names
long CAG trinucleotide repeat-containing gene 79 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034123.1 RefSeqGene

    Range
    5001..121757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001080495.2NP_001073964.2  trinucleotide repeat-containing gene 18 protein

    See identical proteins and their annotated locations for NP_001073964.2

    Status: VALIDATED

    Source sequence(s)
    AB058759, AC092171, AC093376, AC093620, AI567212, AI738451, BC029940, BC131808, BX396597, CN295035, CR993399, DN990416, DR159642, U80753
    Consensus CDS
    CCDS47534.1
    UniProtKB/Swiss-Prot
    O15417
    UniProtKB/TrEMBL
    A3KMH2
    Related
    ENSP00000395538.1, ENST00000430969.5
    Conserved Domains (1) summary
    cd04714
    Location:28162960
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    5306790..5423843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017012737.2XP_016868226.1  trinucleotide repeat-containing gene 18 protein isoform X7

  2. XM_017012728.2XP_016868217.1  trinucleotide repeat-containing gene 18 protein isoform X1

  3. XM_017012736.1XP_016868225.1  trinucleotide repeat-containing gene 18 protein isoform X7

  4. XM_017012733.1XP_016868222.1  trinucleotide repeat-containing gene 18 protein isoform X5

  5. XM_017012732.1XP_016868221.1  trinucleotide repeat-containing gene 18 protein isoform X4

  6. XM_017012731.1XP_016868220.1  trinucleotide repeat-containing gene 18 protein isoform X3

  7. XM_017012730.1XP_016868219.1  trinucleotide repeat-containing gene 18 protein isoform X2

  8. XM_017012734.2XP_016868223.1  trinucleotide repeat-containing gene 18 protein isoform X6

  9. XM_017012738.1XP_016868227.1  trinucleotide repeat-containing gene 18 protein isoform X7

  10. XM_017012735.1XP_016868224.1  trinucleotide repeat-containing gene 18 protein isoform X7

  11. XM_017012739.2XP_016868228.1  trinucleotide repeat-containing gene 18 protein isoform X8

  12. XM_017012740.1XP_016868229.1  trinucleotide repeat-containing gene 18 protein isoform X9

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013722.1: Suppressed sequence

    Description
    NM_001013722.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Support Center