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PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein like [ Homo sapiens (human) ]

Gene ID: 84457, updated on 13-Mar-2020

Summary

Official Symbol
PHYHIPLprovided by HGNC
Official Full Name
phytanoyl-CoA 2-hydroxylase interacting protein likeprovided by HGNC
Primary source
HGNC:HGNC:29378
See related
Ensembl:ENSG00000165443
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 57.9), adrenal (RPKM 16.3) and 8 other tissues See more
Orthologs

Genomic context

See PHYHIPL in Genome Data Viewer
Location:
10q21.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (59175872..59247774)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (60936348..61007815)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein lateral stalk subunit P1 pseudogene 10 Neighboring gene TNF receptor associated factor 6 pseudogene 1 Neighboring gene cervical carcinoma expressed PCNA regulatory lncRNA Neighboring gene family with sequence similarity 13 member C Neighboring gene uncharacterized LOC102724778 Neighboring gene uncharacterized LOC107984235

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1796

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
phytanoyl-CoA hydroxylase-interacting protein-like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143774.1NP_001137246.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a distinct 5' UTR and 5' coding region, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AC025038, AL365474, AW299583, BM676577, DB551000
    Consensus CDS
    CCDS44405.1
    UniProtKB/Swiss-Prot
    Q96FC7
    Related
    ENSP00000362985.3, ENST00000373878.3
    Conserved Domains (1) summary
    cd00063
    Location:27132
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  2. NM_032439.4NP_115815.2  phytanoyl-CoA hydroxylase-interacting protein-like isoform 1

    See identical proteins and their annotated locations for NP_115815.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC016398, AC025038
    Consensus CDS
    CCDS7254.1
    UniProtKB/Swiss-Prot
    Q96FC7
    Related
    ENSP00000362987.4, ENST00000373880.9
    Conserved Domains (1) summary
    cd00063
    Location:53158
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    59175872..59247774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011540276.3XP_011538578.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

    See identical proteins and their annotated locations for XP_011538578.1

    Conserved Domains (1) summary
    cd00063
    Location:7112
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  2. XM_017016783.2XP_016872272.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

    Conserved Domains (1) summary
    cd00063
    Location:7112
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  3. XM_011540275.3XP_011538577.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

    See identical proteins and their annotated locations for XP_011538577.1

    Conserved Domains (1) summary
    cd00063
    Location:7112
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  4. XM_017016782.1XP_016872271.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

    Conserved Domains (1) summary
    cd00063
    Location:7112
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
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