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Cdh11 cadherin 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 84407, updated on 30-Sep-2021

Summary

Official Symbol
Cdh11provided by RGD
Official Full Name
cadherin 11provided by RGD
Primary source
RGD:619742
See related
EnsemblRapid:ENSRNOG00000013481
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
cell-cell adhesion molecule [RGD, Feb 2006]
Expression
Biased expression in Uterus (RPKM 132.1), Lung (RPKM 105.6) and 8 other tissues See more
Orthologs
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Genomic context

See Cdh11 in Genome Data Viewer
Location:
19p14
Exon count:
14
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (2148447..2305754)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (2391181..2551245)

Chromosome 19 - NC_051354.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102556364 Neighboring gene U2 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA44 Neighboring gene similar to basic transcription factor 3 Neighboring gene similar to Aldose reductase (AR) (Aldehyde reductase)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in Schaffer collateral - CA1 synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053392.1NP_445844.1  cadherin-11

    See identical proteins and their annotated locations for NP_445844.1

    Status: VALIDATED

    Source sequence(s)
    JACYVU010000303
    UniProtKB/TrEMBL
    F1MAH6
    Related
    ENSRNOP00000018535.3, ENSRNOT00000018535.6
    Conserved Domains (3) summary
    cd11304
    Location:163264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:79157
    CA; Cadherin repeats
    pfam01049
    Location:649787
    Cadherin_C; Cadherin cytoplasmic region

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051354.1 Reference mRatBN7.2 Primary Assembly

    Range
    2148447..2305754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006255059.4XP_006255121.1  cadherin-11 isoform X1

    See identical proteins and their annotated locations for XP_006255121.1

    UniProtKB/TrEMBL
    F1MAH6
    Conserved Domains (3) summary
    cd11304
    Location:163264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:79157
    CA; Cadherin repeats
    pfam01049
    Location:649787
    Cadherin_C; Cadherin cytoplasmic region
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