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AT1G75210 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843858, updated on 15-Feb-2024

Summary

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Gene symbol
AT1G75210
Gene description
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Primary source
Araport:AT1G75210
Locus tag
AT1G75210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22H5.7; F22H5_7
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (28223836..28229082)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene flavodoxin family protein / radical SAM domain-containing protein Neighboring gene Major facilitator superfamily protein Neighboring gene DNA glycosylase superfamily protein Neighboring gene homeobox protein 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106177.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
NP_177657.2
  • HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT5G48960.1); Has 679 Blast hits to 675 proteins in 116 species: Archae - 0; Bacteria - 48; Metazoa - 445; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28223836..28229082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334679.1 → NP_001320403.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5R3, A0A1P8AMS8, A0A5S9WUH4
    Conserved Domains (1) summary
    pfam05761
    Location:54 → 534
    5_nucleotid; 5' nucleotidase family

  2. NM_001334680.1 → NP_001320404.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5R3, A0A1P8AMS8, A0A5S9WUH4
    Conserved Domains (1) summary
    pfam05761
    Location:54 → 534
    5_nucleotid; 5' nucleotidase family

  3. NM_106177.4 → NP_177657.2  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177657.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5R3, Q8RWN4
    Conserved Domains (1) summary
    pfam05761
    Location:157 → 637
    5_nucleotid; 5' nucleotidase family
Nucleotide Protein
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