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PFI tubulin folding cofactor E / Pfifferling (PFI) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843485, updated on 11-Oct-2018

Summary

Gene symbol
PFI
Gene description
tubulin folding cofactor E / Pfifferling (PFI)
Primary source
Araport:AT1G71440
Locus tag
AT1G71440
Gene type
protein coding
RNA name
tubulin folding cofactor E / Pfifferling (PFI)
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I17.21; F3I17_21; PFIFFERLING; TFC E; TUBULIN-FOLDING COFACTOR E
Summary
Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.

Genomic context

See PFI in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (26921060..26924431, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene hypothetical protein

General gene information

Homology

NM_105813.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
cytokinesis by cell plate formation IGI
Inferred from Genetic Interaction
more info
PubMed 
embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
PubMed 
tubulin complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tubulin folding cofactor E / Pfifferling (PFI)
NP_565017.1
  • PFIFFERLING (PFI); INVOLVED IN: tubulin complex assembly, embryo development ending in seed dormancy, cytokinesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 7270 Blast hits to 6366 proteins in 489 species: Archae - 4; Bacteria - 1949; Metazoa - 3435; Fungi - 492; Plants - 819; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26921060..26924431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105813.4NP_565017.1  tubulin folding cofactor E / Pfifferling (PFI) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565017.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GRL7
    Conserved Domains (3) summary
    smart01052
    Location:1281
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    cd00116
    Location:134358
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:136161
    LRR_RI; leucine-rich repeat [structural motif]
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