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ACBD6 acyl-CoA binding domain containing 6 [ Homo sapiens (human) ]

Gene ID: 84320, updated on 1-Jun-2020

Summary

Official Symbol
ACBD6provided by HGNC
Official Full Name
acyl-CoA binding domain containing 6provided by HGNC
Primary source
HGNC:HGNC:23339
See related
Ensembl:ENSG00000230124 MIM:616352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.9), placenta (RPKM 3.6) and 25 other tissues See more
Orthologs

Genomic context

See ACBD6 in Genome Data Viewer
Location:
1q25.2-q25.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (180269663..180502577, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (180257352..180472022, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371636 Neighboring gene quiescin sulfhydryl oxidase 1 Neighboring gene LIM homeobox 4 Neighboring gene LHX4 antisense RNA 1 Neighboring gene uncharacterized LOC105371637 Neighboring gene voltage dependent anion channel 1 pseudogene 4 Neighboring gene microRNA 3121 Neighboring gene CRISPRi-validated cis-regulatory element chr1.10130 Neighboring gene ovarian adenocarcinoma amplified long non-coding RNA

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC2404

Gene Ontology Provided by GOA

Function Evidence Code Pubs
fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 
lipid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acyl-CoA metabolic process TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
cytosol TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
acyl-CoA-binding domain-containing protein 6
Names
acyl-Coenzyme A binding domain containing 6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032360.4NP_115736.1  acyl-CoA-binding domain-containing protein 6

    See identical proteins and their annotated locations for NP_115736.1

    Status: VALIDATED

    Source sequence(s)
    AA085012, AK314112, BU170874
    Consensus CDS
    CCDS1339.1
    UniProtKB/Swiss-Prot
    Q9BR61
    UniProtKB/TrEMBL
    A0A024R915, B2RAA8
    Related
    ENSP00000356567.3, ENST00000367595.4
    Conserved Domains (3) summary
    cd00204
    Location:165261
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:191222
    ANK; ANK repeat [structural motif]
    pfam00887
    Location:44123
    ACBP; Acyl CoA binding protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    180269663..180502577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002957801.1 RNA Sequence

  2. XR_001737485.2 RNA Sequence

  3. XR_001737484.2 RNA Sequence

  4. XR_921977.3 RNA Sequence

  5. XR_921978.3 RNA Sequence

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