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YIPF4 Yip1 domain family member 4 [ Homo sapiens (human) ]

Gene ID: 84272, updated on 6-Nov-2022

Summary

Official Symbol
YIPF4provided by HGNC
Official Full Name
Yip1 domain family member 4provided by HGNC
Primary source
HGNC:HGNC:28145
See related
Ensembl:ENSG00000119820 MIM:617534; AllianceGenome:HGNC:28145
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FinGER4; Nbla11189
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Located in Golgi apparatus; endoplasmic reticulum; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thyroid (RPKM 14.7), fat (RPKM 12.2) and 25 other tissues See more
Orthologs
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Genomic context

See YIPF4 in Genome Data Viewer
Location:
2p22.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (32277904..32316594)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (32326427..32365131)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (32502973..32541663)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 6 Neighboring gene RNA, U6 small nuclear 647, pseudogene Neighboring gene NLR family CARD domain containing 4 Neighboring gene baculoviral IAP repeat containing 6 Neighboring gene microRNA 558 Neighboring gene BIRC6 antisense RNA 2

Genomic regions, transcripts, and products

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC11061

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vesicle fusion with Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein YIPF4
Names
YIP1 family member 4
putative protein product of Nbla11189

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032312.4NP_115688.1  protein YIPF4

    See identical proteins and their annotated locations for NP_115688.1

    Status: VALIDATED

    Source sequence(s)
    AL121653, AL133245, BC004875, BP207600, BU608699
    Consensus CDS
    CCDS1781.1
    UniProtKB/Swiss-Prot
    Q9BSR8
    Related
    ENSP00000238831.3, ENST00000238831.9
    Conserved Domains (1) summary
    cl21557
    Location:74237
    Yip1; Yip1 domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    32277904..32316594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264599.4XP_005264656.1  protein YIPF4 isoform X1

    Conserved Domains (1) summary
    cl21557
    Location:74200
    Yip1; Yip1 domain
  2. XM_024453173.2XP_024308941.1  protein YIPF4 isoform X2

    Conserved Domains (1) summary
    cl21557
    Location:74174
    Yip1; Yip1 domain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    32326427..32365131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)