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YIPF4 Yip1 domain family member 4 [ Homo sapiens (human) ]

Gene ID: 84272, updated on 3-Oct-2020

Summary

Official Symbol
YIPF4provided by HGNC
Official Full Name
Yip1 domain family member 4provided by HGNC
Primary source
HGNC:HGNC:28145
See related
Ensembl:ENSG00000119820 MIM:617534
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FinGER4; Nbla11189
Expression
Ubiquitous expression in thyroid (RPKM 14.7), fat (RPKM 12.2) and 25 other tissues See more
Orthologs

Genomic context

See YIPF4 in Genome Data Viewer
Location:
2p22.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (32277904..32316594)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (32502958..32533074)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 6 Neighboring gene RNA, U6 small nuclear 647, pseudogene Neighboring gene NLR family CARD domain containing 4 Neighboring gene baculoviral IAP repeat containing 6 Neighboring gene microRNA 558 Neighboring gene BIRC6 antisense RNA 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC11061

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
viral process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IDA
Inferred from Direct Assay
more info
 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein YIPF4
Names
YIP1 family member 4
putative protein product of Nbla11189

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032312.4NP_115688.1  protein YIPF4

    See identical proteins and their annotated locations for NP_115688.1

    Status: VALIDATED

    Source sequence(s)
    AL121653, AL133245, BC004875, BP207600, BU608699
    Consensus CDS
    CCDS1781.1
    UniProtKB/Swiss-Prot
    Q9BSR8
    Related
    ENSP00000238831.3, ENST00000238831.9
    Conserved Domains (1) summary
    cl21557
    Location:74237
    Yip1; Yip1 domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    32277904..32316594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264599.4XP_005264656.1  protein YIPF4 isoform X2

    Conserved Domains (1) summary
    cl21557
    Location:74200
    Yip1; Yip1 domain
  2. XM_024453173.1XP_024308941.1  protein YIPF4 isoform X3

    Conserved Domains (1) summary
    cl21557
    Location:74174
    Yip1; Yip1 domain
  3. XM_011533125.3XP_011531427.1  protein YIPF4 isoform X1

    See identical proteins and their annotated locations for XP_011531427.1

    Conserved Domains (1) summary
    cl21557
    Location:74211
    Yip1; Yip1 domain
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