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SYT3 synaptotagmin 3 [ Homo sapiens (human) ]

Gene ID: 84258, updated on 3-Jan-2019

Summary

Official Symbol
SYT3provided by HGNC
Official Full Name
synaptotagmin 3provided by HGNC
Primary source
HGNC:HGNC:11511
See related
Ensembl:ENSG00000213023 MIM:600327
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SytIII
Expression
Biased expression in brain (RPKM 3.3), testis (RPKM 0.5) and 3 other tissues See more
Orthologs

Genomic context

See SYT3 in Genome Data Viewer
Location:
19q13.33
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 19 NC_000019.10 (50621977..50658114, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (51125234..51143092, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 4B Neighboring gene small NF90 (ILF3) associated RNA F Neighboring gene chromosome 19 open reading frame 81 Neighboring gene SH3 and multiple ankyrin repeat domains 1 Neighboring gene C-type lectin domain containing 11A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • DKFZp761O132

Gene Ontology Provided by GOA

Function Evidence Code Pubs
SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium-dependent phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium-dependent phospholipid binding NAS
Non-traceable Author Statement
more info
PubMed 
clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphatidylserine binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
calcium ion regulated exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to calcium ion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of dendrite extension IDA
Inferred from Direct Assay
more info
PubMed 
regulation of calcium ion-dependent exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of dopamine secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
endosome IDA
Inferred from Direct Assay
more info
 
exocytic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
synaptotagmin-3
Names
synaptotagmin III

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160328.1NP_001153800.1  synaptotagmin-3

    See identical proteins and their annotated locations for NP_001153800.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    BC028379, BC031067, BI912995, BM688060, BM710834
    Consensus CDS
    CCDS12798.1
    UniProtKB/Swiss-Prot
    Q9BQG1
    UniProtKB/TrEMBL
    A0A024R4I9
    Related
    ENSP00000468982.1, ENST00000593901.5
    Conserved Domains (2) summary
    cd08385
    Location:299424
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:433567
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
  2. NM_001160329.2NP_001153801.1  synaptotagmin-3

    See identical proteins and their annotated locations for NP_001153801.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AC008743
    Consensus CDS
    CCDS12798.1
    UniProtKB/Swiss-Prot
    Q9BQG1
    UniProtKB/TrEMBL
    A0A024R4I9
    Related
    ENSP00000469398.1, ENST00000600079.5
    Conserved Domains (2) summary
    cd08385
    Location:299424
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:433567
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
  3. NM_032298.2NP_115674.1  synaptotagmin-3

    See identical proteins and their annotated locations for NP_115674.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AL136594, BM688060, BM710834
    Consensus CDS
    CCDS12798.1
    UniProtKB/Swiss-Prot
    Q9BQG1
    UniProtKB/TrEMBL
    A0A024R4I9
    Related
    ENSP00000340914.3, ENST00000338916.8
    Conserved Domains (2) summary
    cd08385
    Location:299424
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:433567
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p12 Primary Assembly

    Range
    50621977..50658114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527391.3XP_011525693.1  synaptotagmin-3 isoform X1

    See identical proteins and their annotated locations for XP_011525693.1

    UniProtKB/Swiss-Prot
    Q9BQG1
    UniProtKB/TrEMBL
    A0A024R4I9
    Conserved Domains (2) summary
    cd08385
    Location:299424
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:433567
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
  2. XM_011527390.2XP_011525692.1  synaptotagmin-3 isoform X1

    See identical proteins and their annotated locations for XP_011525692.1

    UniProtKB/Swiss-Prot
    Q9BQG1
    UniProtKB/TrEMBL
    A0A024R4I9
    Conserved Domains (2) summary
    cd08385
    Location:299424
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:433567
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
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