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RTL6 retrotransposon Gag like 6 [ Homo sapiens (human) ]

Gene ID: 84247, updated on 23-Nov-2021

Summary

Official Symbol
RTL6provided by HGNC
Official Full Name
retrotransposon Gag like 6provided by HGNC
Primary source
HGNC:HGNC:13343
See related
Ensembl:ENSG00000188636
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Mar6; Mart6; SIRH3; LDOC1L; dJ1033E15.2
Expression
Ubiquitous expression in brain (RPKM 18.2), ovary (RPKM 11.8) and 25 other tissues See more
Orthologs
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Genomic context

See RTL6 in Genome Data Viewer
Location:
22q13.31
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (44492583..44498233, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (44888463..44894113, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1656 Neighboring gene MRPS18C pseudogene 6 Neighboring gene uncharacterized LOC105373059 Neighboring gene keratin 18 pseudogene 23

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp761O17121

General protein information

Preferred Names
retrotransposon Gag-like protein 6
Names
LDOC1 like
Sushi-Ichi retrotransposon homolog 3
leucine zipper down-regulated in cancer 1 like
leucine zipper protein down-regulated in cancer cells-like
mammalian retrotransposon-derived 6
mammalian retrotransposon-derived protein 6
protein LDOC1L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032287.3NP_115663.2  retrotransposon Gag-like protein 6

    See identical proteins and their annotated locations for NP_115663.2

    Status: VALIDATED

    Source sequence(s)
    AL136553, BC018713, BC030232, Z75407
    Consensus CDS
    CCDS33662.1
    UniProtKB/Swiss-Prot
    Q6ICC9
    UniProtKB/TrEMBL
    Q9BQJ3
    Related
    ENSP00000340434.3, ENST00000341255.4
    Conserved Domains (1) summary
    pfam16297
    Location:98177
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    44492583..44498233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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