Format

Send to:

Choose Destination

SK42 shaggy-like kinase 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842162, updated on 10-Oct-2019

Summary

Gene symbol
SK42
Gene description
shaggy-like kinase 42
Primary source
Araport:AT1G57870
Locus tag
AT1G57870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSK42; F12K22.12; F12K22_12; shaggy-like kinase 42

Genomic context

See SK42 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (21431051..21436329, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Toll-Interleukin-Resistance (TIR) domain family protein Neighboring gene Translation protein SH3-like family protein Neighboring gene F-box protein Neighboring gene purine permease 17 Neighboring gene Nucleotide-sugar transporter family protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001333808.1
NM_001333809.1
NM_104580.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
hyperosmotic response IEP
Inferred from Expression Pattern
more info
PubMed 
response to salt stress IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
shaggy-like kinase 42
NP_001185256.1
  • shaggy-like kinase 42 (SK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: shaggy-like protein kinase 41 (TAIR:AT1G09840.6).
NP_001319262.1
  • shaggy-like kinase 42 (SK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like protein kinase 41 (TAIR:AT1G09840.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_176096.1
  • shaggy-like kinase 42 (SK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-like protein kinase 41 (TAIR:AT1G09840.6); Has 104123 Blast hits to 103018 proteins in 3860 species: Archae - 88; Bacteria - 10212; Metazoa - 38684; Fungi - 11634; Plants - 25207; Viruses - 381; Other Eukaryotes - 17917 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21431051..21436329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198327.1NP_001185256.1  shaggy-like kinase 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185256.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I9N7
    Conserved Domains (2) summary
    smart00220
    Location:82366
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14137
    Location:77369
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3
  2. NM_001333808.1NP_001319262.1  shaggy-like kinase 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FVS6
  3. NM_104580.5NP_176096.1  shaggy-like kinase 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176096.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FVS6
    Conserved Domains (2) summary
    smart00220
    Location:82366
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14137
    Location:77369
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3
  4. NM_001333809.1NP_001320412.1  shaggy-like kinase 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FVS6
Support Center